Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 C18orf15-201ENST00000623680 2534 ntBASIC17.34■□□□□ 0.37
COL4A3BPQ9Y5P4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 AL121723.1-201ENST00000445194 1519 ntBASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.33■□□□□ 0.37
COL4A3BPQ9Y5P4 AC068587.6-202ENST00000641839 5619 ntBASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 RN7SL837P-201ENST00000463010 287 ntBASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 GIMAP3P-201ENST00000495150 836 ntBASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL4A3BPQ9Y5P4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AC084364.1-201ENST00000551967 1556 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 RPL5P21-201ENST00000404620 815 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AL442647.2-201ENST00000429864 857 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 BRI3BPP1-201ENST00000594224 787 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AL033527.5-201ENST00000641382 801 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 AC006058.4-201ENST00000624016 1670 ntBASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.32■□□□□ 0.36
COL4A3BPQ9Y5P4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms