Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 KRT18P66-201ENST00000452970 1269 ntBASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 SYT17-208ENST00000568433 812 ntTSL 3 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 AC011491.1-203ENST00000637688 543 ntBASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM4Q9ULL8 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 ACTG1P2-201ENST00000415776 1125 ntBASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 ACTG1P11-201ENST00000425411 1125 ntBASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 OARD1-204ENST00000464633 717 ntTSL 2 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 AL353726.2-201ENST00000623259 884 ntBASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC29.08■■■□□ 2.25
SHROOM4Q9ULL8 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 RN7SL774P-201ENST00000577467 290 ntBASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
SHROOM4Q9ULL8 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 MPV17-205ENST00000402310 906 ntTSL 5 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 KLF2P2-201ENST00000416807 1039 ntBASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 HNRNPA1P63-201ENST00000427917 963 ntBASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 PGAM1P5-201ENST00000548011 764 ntBASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 AC005730.2-201ENST00000564549 1184 ntBASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 AC022748.3-201ENST00000621828 275 ntBASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM4Q9ULL8 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 BX539320.1-201ENST00000623759 877 ntBASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 AC138932.1-201ENST00000534164 6830 ntBASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC29.05■■■□□ 2.24
SHROOM4Q9ULL8 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms