Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AL121723.1-201ENST00000445194 1519 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC112482.1-201ENST00000492080 688 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC018529.2-202ENST00000611482 3087 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 AC018442.1-201ENST00000421439 2061 ntBASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.92■□□□□ 0.3
LIMA1Q9UHB6 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 KRT18P43-201ENST00000469825 1281 ntBASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIMA1Q9UHB6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 BX640514.1-201ENST00000583223 1918 ntBASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIMA1Q9UHB6 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms