Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 HCG24-202ENST00000414398 717 ntTSL 3 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MIR6799-201ENST00000620297 69 ntBASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAIPQ9BWF2 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 AC093433.1-201ENST00000458048 571 ntBASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 AC022137.2-201ENST00000503482 481 ntBASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.98■□□□□ 0.31
TRAIPQ9BWF2 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 RPL7P3-201ENST00000441388 714 ntBASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 KLF2P4-201ENST00000451959 1225 ntBASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 FO681548.1-201ENST00000455617 1132 ntBASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRAIPQ9BWF2 AC093525.8-201ENST00000624099 1342 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms