Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 E2F3P2-201ENST00000447755 1422 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 KRT17P5-201ENST00000332088 839 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC13.24□□□□□ -0.29
COL12A1Q99715 BCL2L12P1-201ENST00000508390 733 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC13.24□□□□□ -0.29
COL12A1Q99715 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC13.24□□□□□ -0.29
COL12A1Q99715 CMC2-224ENST00000630396 481 ntTSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 LRRC59-203ENST00000576448 1531 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 PCDHB19P-201ENST00000570871 2371 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC13.24□□□□□ -0.29
COL12A1Q99715 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.24□□□□□ -0.29
COL12A1Q99715 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC13.23□□□□□ -0.29
COL12A1Q99715 GDNF-207ENST00000515058 764 ntTSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 AC090857.1-201ENST00000527400 390 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.23□□□□□ -0.29
COL12A1Q99715 PHBP15-201ENST00000574228 665 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 AC144522.1-201ENST00000625111 1658 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 AC006449.5-201ENST00000610658 2098 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 AC022211.2-201ENST00000585075 2527 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC13.23□□□□□ -0.29
COL12A1Q99715 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 LINC01165-201ENST00000445190 1623 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC13.23□□□□□ -0.29
COL12A1Q99715 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.23□□□□□ -0.29
COL12A1Q99715 AP000911.2-201ENST00000534330 502 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 OR10B1P-201ENST00000601666 907 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 AC073592.2-201ENST00000623062 780 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL12A1Q99715 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 ME2P1-201ENST00000426028 1970 ntBASIC13.23□□□□□ -0.29
COL12A1Q99715 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL12A1Q99715 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.23□□□□□ -0.29
COL12A1Q99715 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 AC011477.6-201ENST00000604980 1927 ntBASIC13.22□□□□□ -0.29
COL12A1Q99715 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL12A1Q99715 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.22□□□□□ -0.29
COL12A1Q99715 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC13.22□□□□□ -0.29
COL12A1Q99715 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.22□□□□□ -0.29
COL12A1Q99715 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL12A1Q99715 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms