Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 CYP51A1P3-201ENST00000400072 1428 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC239868.1-201ENST00000369385 493 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 RPS9P1-201ENST00000419943 583 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 RN7SL258P-201ENST00000478664 300 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC026434.2-201ENST00000506094 1078 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 GMFG-209ENST00000600322 622 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 PCDHA12-202ENST00000613593 2588 ntBASIC20.66■□□□□ 0.9
NPHP3Q7Z494 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PTK2-225ENST00000520892 571 ntTSL 4 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 AP002803.1-201ENST00000528836 498 ntBASIC20.65■□□□□ 0.9
NPHP3Q7Z494 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
NPHP3Q7Z494 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NPHP3Q7Z494 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 AGGF1P2-201ENST00000426656 2106 ntBASIC20.64■□□□□ 0.89
NPHP3Q7Z494 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 AC012441.2-201ENST00000444843 739 ntBASIC20.64■□□□□ 0.89
NPHP3Q7Z494 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 AC008805.1-201ENST00000590892 364 ntBASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FAM90A7P-201ENST00000382628 1395 ntBASIC20.64■□□□□ 0.89
NPHP3Q7Z494 FAM90A23P-201ENST00000400136 1395 ntBASIC20.64■□□□□ 0.89
NPHP3Q7Z494 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NPHP3Q7Z494 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms