Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 AC091804.1-201ENST00000486888 567 ntBASIC14.96□□□□□ -0.01
COL28A1Q2UY09 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 KRT90P-201ENST00000549264 1064 ntBASIC14.96□□□□□ -0.01
COL28A1Q2UY09 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.96□□□□□ -0.01
COL28A1Q2UY09 U82695.1-201ENST00000635752 1889 ntBASIC14.96□□□□□ -0.01
COL28A1Q2UY09 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
COL28A1Q2UY09 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL28A1Q2UY09 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 REXO1L8P-201ENST00000604378 1897 ntBASIC14.95□□□□□ -0.02
COL28A1Q2UY09 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 BX284668.4-201ENST00000453917 508 ntBASIC14.95□□□□□ -0.02
COL28A1Q2UY09 IMP3P2-201ENST00000489760 475 ntBASIC14.95□□□□□ -0.02
COL28A1Q2UY09 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 ENPP7P5-201ENST00000541031 1031 ntBASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CHMP4BP1-201ENST00000556017 588 ntBASIC14.95□□□□□ -0.02
COL28A1Q2UY09 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.95□□□□□ -0.02
COL28A1Q2UY09 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL28A1Q2UY09 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms