Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
USP46P62068 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.32■□□□□ 0.2
USP46P62068 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
USP46P62068 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.32■□□□□ 0.2
USP46P62068 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.32■□□□□ 0.2
USP46P62068 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.32■□□□□ 0.2
USP46P62068 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.32■□□□□ 0.2
USP46P62068 SNX29P1-201ENST00000548357 1007 ntBASIC16.32■□□□□ 0.2
USP46P62068 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 AC018665.1-201ENST00000622927 1362 ntBASIC16.32■□□□□ 0.2
USP46P62068 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
USP46P62068 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
USP46P62068 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.32■□□□□ 0.2
USP46P62068 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
USP46P62068 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.31■□□□□ 0.2
USP46P62068 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
USP46P62068 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 MIR1909-201ENST00000411312 80 ntBASIC16.31■□□□□ 0.2
USP46P62068 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.31■□□□□ 0.2
USP46P62068 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 MIR4259-201ENST00000584466 101 ntBASIC16.31■□□□□ 0.2
USP46P62068 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.31■□□□□ 0.2
USP46P62068 AC233724.13-201ENST00000598383 410 ntBASIC16.31■□□□□ 0.2
USP46P62068 AL359881.2-201ENST00000602973 570 ntBASIC16.31■□□□□ 0.2
USP46P62068 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.31■□□□□ 0.2
USP46P62068 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USP46P62068 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
USP46P62068 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USP46P62068 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms