Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMBIM7P-203ENST00000641617 1718 ntBASIC12.78□□□□□ -0.36
CDX1P47902 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.78□□□□□ -0.36
CDX1P47902 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CDX1P47902 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CDX1P47902 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC12.78□□□□□ -0.36
CDX1P47902 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDX1P47902 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDX1P47902 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDX1P47902 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CDX1P47902 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CDX1P47902 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.77□□□□□ -0.36
CDX1P47902 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
CDX1P47902 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.77□□□□□ -0.36
CDX1P47902 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
CDX1P47902 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.77□□□□□ -0.36
CDX1P47902 AC073439.1-201ENST00000624121 1774 ntBASIC12.77□□□□□ -0.36
CDX1P47902 AC027612.1-201ENST00000445234 2395 ntBASIC12.77□□□□□ -0.36
CDX1P47902 ST20-AS1-201ENST00000560255 4223 ntBASIC12.77□□□□□ -0.36
CDX1P47902 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CDX1P47902 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.77□□□□□ -0.37
CDX1P47902 AC142381.1-201ENST00000426099 345 ntBASIC12.77□□□□□ -0.37
CDX1P47902 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.77□□□□□ -0.37
CDX1P47902 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.77□□□□□ -0.37
CDX1P47902 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.77□□□□□ -0.37
CDX1P47902 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 Z92544.3-201ENST00000624747 417 ntBASIC12.77□□□□□ -0.37
CDX1P47902 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.77□□□□□ -0.37
CDX1P47902 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.77□□□□□ -0.37
CDX1P47902 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 TUBB3P1-201ENST00000405796 1332 ntBASIC12.77□□□□□ -0.37
CDX1P47902 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CDX1P47902 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CDX1P47902 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.77□□□□□ -0.37
CDX1P47902 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CDX1P47902 AC027601.5-201ENST00000624065 2482 ntBASIC12.77□□□□□ -0.37
CDX1P47902 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CDX1P47902 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 GPAA1P2-202ENST00000606848 1787 ntBASIC12.76□□□□□ -0.37
CDX1P47902 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 AC013726.1-201ENST00000563747 2285 ntBASIC12.76□□□□□ -0.37
CDX1P47902 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.76□□□□□ -0.37
CDX1P47902 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.76□□□□□ -0.37
CDX1P47902 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.76□□□□□ -0.37
CDX1P47902 SPDYE14P-201ENST00000442619 822 ntBASIC12.76□□□□□ -0.37
CDX1P47902 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.76□□□□□ -0.37
CDX1P47902 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.76□□□□□ -0.37
CDX1P47902 AC098859.1-201ENST00000502915 1238 ntBASIC12.76□□□□□ -0.37
CDX1P47902 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 SPTSSB-204ENST00000617024 1292 ntBASIC12.76□□□□□ -0.37
CDX1P47902 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC12.76□□□□□ -0.37
CDX1P47902 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CDX1P47902 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC12.76□□□□□ -0.37
CDX1P47902 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms