Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC17.79■□□□□ 0.44
SCN4AP35499 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 AL157414.3-201ENST00000624276 1954 ntBASIC17.79■□□□□ 0.44
SCN4AP35499 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SCN4AP35499 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 AC144522.1-201ENST00000625111 1658 ntBASIC17.79■□□□□ 0.44
SCN4AP35499 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 BAK1P1-201ENST00000317045 636 ntBASIC17.79■□□□□ 0.44
SCN4AP35499 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 Z69890.1-201ENST00000382990 339 ntBASIC17.79■□□□□ 0.44
SCN4AP35499 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC17.79■□□□□ 0.44
SCN4AP35499 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.79■□□□□ 0.44
SCN4AP35499 NEU3-207ENST00000534628 746 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC17.79■□□□□ 0.44
SCN4AP35499 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SCN4AP35499 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SCN4AP35499 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.79■□□□□ 0.44
SCN4AP35499 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 MTHFR-217ENST00000641820 1569 ntBASIC17.78■□□□□ 0.44
SCN4AP35499 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.78■□□□□ 0.44
SCN4AP35499 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SCN4AP35499 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
SCN4AP35499 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC17.78■□□□□ 0.44
SCN4AP35499 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.78■□□□□ 0.44
SCN4AP35499 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC17.78■□□□□ 0.44
SCN4AP35499 AP000911.2-201ENST00000534330 502 ntBASIC17.78■□□□□ 0.44
SCN4AP35499 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC17.78■□□□□ 0.44
SCN4AP35499 RN7SL470P-201ENST00000583069 259 ntBASIC17.78■□□□□ 0.44
SCN4AP35499 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.78■□□□□ 0.44
SCN4AP35499 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17.78■□□□□ 0.44
SCN4AP35499 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SCN4AP35499 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
SCN4AP35499 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.77■□□□□ 0.44
SCN4AP35499 AC069224.1-201ENST00000566372 1715 ntBASIC17.77■□□□□ 0.44
SCN4AP35499 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SCN4AP35499 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SCN4AP35499 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC17.77■□□□□ 0.44
SCN4AP35499 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SCN4AP35499 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.77■□□□□ 0.44
SCN4AP35499 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.77■□□□□ 0.44
SCN4AP35499 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.77■□□□□ 0.44
SCN4AP35499 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SCN4AP35499 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.77■□□□□ 0.44
SCN4AP35499 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.77■□□□□ 0.44
SCN4AP35499 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 MST1L-201ENST00000442552 2185 ntBASIC17.77■□□□□ 0.44
SCN4AP35499 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SCN4AP35499 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
SCN4AP35499 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN4AP35499 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.77■□□□□ 0.43
SCN4AP35499 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms