Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.24■□□□□ 0.83
HOXC9P31274 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
HOXC9P31274 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HOXC9P31274 INE2-201ENST00000630399 1874 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 TUBBP5-203ENST00000508529 1334 ntBASIC20.24■□□□□ 0.83
HOXC9P31274 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC9P31274 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HOXC9P31274 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HOXC9P31274 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 DPM3-202ENST00000368399 517 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HOXC9P31274 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 AL513523.2-202ENST00000427283 2040 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HOXC9P31274 UPF3AP2-201ENST00000457924 1132 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC20.23■□□□□ 0.83
HOXC9P31274 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.23■□□□□ 0.83
HOXC9P31274 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
HOXC9P31274 FOS-206ENST00000555347 1280 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXC9P31274 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 AC079328.1-201ENST00000560358 952 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.23■□□□□ 0.83
HOXC9P31274 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 KLK3-207ENST00000595952 969 ntTSL 3 BASIC20.23■□□□□ 0.83
HOXC9P31274 AC016629.1-201ENST00000596579 586 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 AC084018.2-201ENST00000613093 2607 ntBASIC20.23■□□□□ 0.83
HOXC9P31274 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC9P31274 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC9P31274 KRT8P29-201ENST00000420409 1371 ntBASIC20.22■□□□□ 0.83
HOXC9P31274 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HOXC9P31274 AC090616.6-203ENST00000579186 1945 ntBASIC20.22■□□□□ 0.83
HOXC9P31274 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.22■□□□□ 0.83
HOXC9P31274 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 ELK2AP-201ENST00000392510 1007 ntBASIC20.22■□□□□ 0.83
HOXC9P31274 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC9P31274 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC9P31274 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC9P31274 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.22■□□□□ 0.83
HOXC9P31274 RERG-205ENST00000537647 935 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC9P31274 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC9P31274 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.22■□□□□ 0.83
HOXC9P31274 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC20.22■□□□□ 0.83
HOXC9P31274 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC9P31274 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC9P31274 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 AL391005.1-201ENST00000623953 2435 ntBASIC20.22■□□□□ 0.83
HOXC9P31274 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 AC009093.2-202ENST00000620513 2079 ntBASIC20.22■□□□□ 0.83
HOXC9P31274 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC9P31274 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC9P31274 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 AL359258.3-201ENST00000622910 2331 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 PRAL-201ENST00000624952 3286 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HOXC9P31274 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC20.21■□□□□ 0.83
HOXC9P31274 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 RNMTL1P1-201ENST00000454103 560 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXC9P31274 IMP3P2-201ENST00000489760 475 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.21■□□□□ 0.83
HOXC9P31274 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.21■□□□□ 0.83
HOXC9P31274 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC9P31274 BNIP3P13-201ENST00000599968 566 ntBASIC20.21■□□□□ 0.83
HOXC9P31274 AP001505.2-201ENST00000616815 443 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms