Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.12■□□□□ 0.49
COL4A5P29400 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A5P29400 AL157407.1-201ENST00000435784 904 ntBASIC18.12■□□□□ 0.49
COL4A5P29400 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A5P29400 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A5P29400 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.12■□□□□ 0.49
COL4A5P29400 MIR4522-201ENST00000584932 87 ntBASIC18.12■□□□□ 0.49
COL4A5P29400 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.12■□□□□ 0.49
COL4A5P29400 MIR6720-201ENST00000611664 98 ntBASIC18.12■□□□□ 0.49
COL4A5P29400 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 CICP11-201ENST00000434745 2827 ntBASIC18.12■□□□□ 0.49
COL4A5P29400 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL4A5P29400 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL4A5P29400 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A5P29400 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A5P29400 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A5P29400 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
COL4A5P29400 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A5P29400 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A5P29400 RPL5P21-201ENST00000404620 815 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 KRT18P36-201ENST00000411618 1276 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 AC012441.2-201ENST00000444843 739 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 PIN4P1-201ENST00000451079 396 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.11■□□□□ 0.49
COL4A5P29400 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A5P29400 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.11■□□□□ 0.49
COL4A5P29400 PHBP15-201ENST00000574228 665 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
COL4A5P29400 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A5P29400 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL4A5P29400 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A5P29400 AD000864.1-201ENST00000624076 2295 ntBASIC18.11■□□□□ 0.49
COL4A5P29400 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A5P29400 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
COL4A5P29400 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL4A5P29400 AC005618.3-201ENST00000624928 458 ntBASIC18.1■□□□□ 0.49
COL4A5P29400 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.1■□□□□ 0.49
COL4A5P29400 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A5P29400 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A5P29400 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
COL4A5P29400 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 AC015909.3-201ENST00000572855 1794 ntBASIC18.1■□□□□ 0.49
COL4A5P29400 FAM90A2P-201ENST00000511144 1395 ntBASIC18.1■□□□□ 0.49
COL4A5P29400 FAM90A25P-201ENST00000528404 1395 ntBASIC18.1■□□□□ 0.49
COL4A5P29400 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A5P29400 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A5P29400 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL4A5P29400 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A5P29400 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A5P29400 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms