Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 KRT18P66-201ENST00000452970 1269 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.97■□□□□ 0.63
COL5A3P25940 RBM8B-201ENST00000555532 525 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 AC010491.1-201ENST00000563101 2797 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.97■□□□□ 0.63
COL5A3P25940 AC005632.3-201ENST00000605544 308 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.97■□□□□ 0.63
COL5A3P25940 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
COL5A3P25940 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 AC012508.2-201ENST00000567613 1472 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
COL5A3P25940 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.97■□□□□ 0.63
COL5A3P25940 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 RPL18AP3-201ENST00000462885 528 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 VPS18-202ENST00000558474 873 ntTSL 3 BASIC18.97■□□□□ 0.63
COL5A3P25940 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
COL5A3P25940 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COL5A3P25940 PHBP15-201ENST00000574228 665 ntBASIC18.97■□□□□ 0.63
COL5A3P25940 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL5A3P25940 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 AC020916.1-201ENST00000587762 1774 ntBASIC18.96■□□□□ 0.63
COL5A3P25940 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL5A3P25940 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.96■□□□□ 0.63
COL5A3P25940 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 AC090616.6-203ENST00000579186 1945 ntBASIC18.96■□□□□ 0.63
COL5A3P25940 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.96■□□□□ 0.63
COL5A3P25940 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 CICP12-201ENST00000455801 843 ntBASIC18.96■□□□□ 0.63
COL5A3P25940 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.96■□□□□ 0.63
COL5A3P25940 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.96■□□□□ 0.63
COL5A3P25940 AC133540.1-201ENST00000620845 1019 ntBASIC18.96■□□□□ 0.63
COL5A3P25940 HLA-C-210ENST00000640219 976 ntBASIC18.96■□□□□ 0.63
COL5A3P25940 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL5A3P25940 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
COL5A3P25940 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL5A3P25940 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.96■□□□□ 0.63
COL5A3P25940 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.96■□□□□ 0.63
COL5A3P25940 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A3P25940 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 AC239868.1-201ENST00000369385 493 ntBASIC18.95■□□□□ 0.62
COL5A3P25940 RPS9P1-201ENST00000419943 583 ntBASIC18.95■□□□□ 0.62
COL5A3P25940 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 AP000358.1-201ENST00000456260 156 ntBASIC18.95■□□□□ 0.62
COL5A3P25940 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A3P25940 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A3P25940 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A3P25940 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A3P25940 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.95■□□□□ 0.62
COL5A3P25940 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A3P25940 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A3P25940 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.95■□□□□ 0.62
COL5A3P25940 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
COL5A3P25940 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.95■□□□□ 0.62
COL5A3P25940 ZBED1P1-201ENST00000502364 1930 ntBASIC18.95■□□□□ 0.62
COL5A3P25940 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL5A3P25940 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 AP000356.3-201ENST00000382243 753 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.94■□□□□ 0.62
COL5A3P25940 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms