Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.52■□□□□ 0.07
XRCC1P18887 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.51■□□□□ 0.07
XRCC1P18887 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.51■□□□□ 0.07
XRCC1P18887 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 AC005089.1-201ENST00000619486 2241 ntBASIC15.51■□□□□ 0.07
XRCC1P18887 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.51■□□□□ 0.07
XRCC1P18887 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.51■□□□□ 0.07
XRCC1P18887 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.51■□□□□ 0.07
XRCC1P18887 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 MEP1AP4-201ENST00000423244 1087 ntBASIC15.51■□□□□ 0.07
XRCC1P18887 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.51■□□□□ 0.07
XRCC1P18887 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.51■□□□□ 0.07
XRCC1P18887 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.51■□□□□ 0.07
XRCC1P18887 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 AL358472.5-202ENST00000641448 1267 ntBASIC15.51■□□□□ 0.07
XRCC1P18887 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 AC134407.2-201ENST00000625089 1978 ntBASIC15.51■□□□□ 0.07
XRCC1P18887 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
XRCC1P18887 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.51■□□□□ 0.07
XRCC1P18887 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.5■□□□□ 0.07
XRCC1P18887 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.5■□□□□ 0.07
XRCC1P18887 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
XRCC1P18887 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.5■□□□□ 0.07
XRCC1P18887 AC087499.6-201ENST00000411576 835 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.5■□□□□ 0.07
XRCC1P18887 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.5■□□□□ 0.07
XRCC1P18887 PHKG1P2-201ENST00000457537 863 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.5■□□□□ 0.07
XRCC1P18887 API5-211ENST00000534695 560 ntTSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.5■□□□□ 0.07
XRCC1P18887 TIMM17BP1-201ENST00000545713 516 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 AC004790.1-201ENST00000612686 536 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 AC025048.6-201ENST00000634326 1161 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 AC090616.6-203ENST00000579186 1945 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 LINC01101-201ENST00000622953 1884 ntBASIC15.5■□□□□ 0.07
XRCC1P18887 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.5■□□□□ 0.07
XRCC1P18887 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
XRCC1P18887 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
XRCC1P18887 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
XRCC1P18887 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
XRCC1P18887 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
XRCC1P18887 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.49■□□□□ 0.07
XRCC1P18887 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms