Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXC4P09017 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
HOXC4P09017 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXC4P09017 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HOXC4P09017 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXC4P09017 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
HOXC4P09017 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXC4P09017 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HOXC4P09017 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 LINC02199-201ENST00000506655 2702 ntBASIC14.98□□□□□ -0.01
HOXC4P09017 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
HOXC4P09017 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 AL590640.2-201ENST00000457038 527 ntBASIC14.98□□□□□ -0.01
HOXC4P09017 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.98□□□□□ -0.01
HOXC4P09017 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
HOXC4P09017 C2orf69P2-201ENST00000562032 1123 ntBASIC14.98□□□□□ -0.01
HOXC4P09017 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXC4P09017 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXC4P09017 KRT8P44-201ENST00000441609 1350 ntBASIC14.98□□□□□ -0.01
HOXC4P09017 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.97□□□□□ -0.01
HOXC4P09017 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXC4P09017 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXC4P09017 MESTP3-201ENST00000503460 968 ntBASIC14.97□□□□□ -0.01
HOXC4P09017 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXC4P09017 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.97□□□□□ -0.01
HOXC4P09017 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.97□□□□□ -0.01
HOXC4P09017 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 REXO1L4P-201ENST00000605109 1937 ntBASIC14.97□□□□□ -0.01
HOXC4P09017 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXC4P09017 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.97□□□□□ -0.01
HOXC4P09017 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.97□□□□□ -0.01
HOXC4P09017 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms