Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
VPS4BO75351 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
VPS4BO75351 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 CICP23-201ENST00000605013 2741 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS4BO75351 AL136982.4-201ENST00000437689 1740 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS4BO75351 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 RPL5P21-201ENST00000404620 815 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS4BO75351 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.27■□□□□ 0.04
VPS4BO75351 AC142381.1-201ENST00000426099 345 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS4BO75351 GPR53P-205ENST00000457298 1084 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 AC022494.1-201ENST00000466044 728 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 AC027369.6-201ENST00000525520 931 ntBASIC15.27■□□□□ 0.04
VPS4BO75351 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS4BO75351 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS4BO75351 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
VPS4BO75351 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS4BO75351 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.27■□□□□ 0.04
VPS4BO75351 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS4BO75351 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VPS4BO75351 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS4BO75351 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.27■□□□□ 0.03
VPS4BO75351 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS4BO75351 CYP4F24P-201ENST00000586049 1580 ntBASIC15.27■□□□□ 0.03
VPS4BO75351 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS4BO75351 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS4BO75351 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VPS4BO75351 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS4BO75351 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS4BO75351 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 AC023024.2-201ENST00000623561 1993 ntBASIC15.26■□□□□ 0.03
VPS4BO75351 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 HLA-H-201ENST00000383620 1096 ntBASIC15.26■□□□□ 0.03
VPS4BO75351 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS4BO75351 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS4BO75351 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 ALG1L8P-201ENST00000533887 760 ntBASIC15.26■□□□□ 0.03
VPS4BO75351 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.26■□□□□ 0.03
VPS4BO75351 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS4BO75351 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
VPS4BO75351 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
VPS4BO75351 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS4BO75351 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VPS4BO75351 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS4BO75351 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms