Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NPHP4O75161 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP4O75161 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 AL354861.1-201ENST00000445213 355 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP4O75161 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
NPHP4O75161 MIR3188-201ENST00000583494 85 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 MIR4472-1-201ENST00000584349 80 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NPHP4O75161 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 MST1L-201ENST00000442552 2185 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 COX20P1-201ENST00000366529 357 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 BANF1P3-201ENST00000412556 261 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 GCSHP3-201ENST00000431120 391 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 SKA2-202ENST00000437036 625 ntTSL 2 BASIC21.21■□□□□ 0.99
NPHP4O75161 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC21.21■□□□□ 0.99
NPHP4O75161 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC21.21■□□□□ 0.99
NPHP4O75161 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NPHP4O75161 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 CR383656.3-201ENST00000551315 183 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC21.21■□□□□ 0.99
NPHP4O75161 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 RN7SL470P-201ENST00000583069 259 ntBASIC21.21■□□□□ 0.99
NPHP4O75161 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
NPHP4O75161 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 STK16-203ENST00000409516 895 ntTSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC21.2■□□□□ 0.98
NPHP4O75161 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC21.2■□□□□ 0.98
NPHP4O75161 RPS15-202ENST00000585665 467 ntTSL 3 BASIC21.2■□□□□ 0.98
NPHP4O75161 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPHP4O75161 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
NPHP4O75161 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
NPHP4O75161 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 AC144522.1-201ENST00000625111 1658 ntBASIC21.19■□□□□ 0.98
NPHP4O75161 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP4O75161 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP4O75161 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NPHP4O75161 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC21.19■□□□□ 0.98
NPHP4O75161 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC21.19■□□□□ 0.98
NPHP4O75161 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC21.19■□□□□ 0.98
NPHP4O75161 NEU3-207ENST00000534628 746 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP4O75161 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC21.19■□□□□ 0.98
NPHP4O75161 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC21.19■□□□□ 0.98
NPHP4O75161 AC133540.1-201ENST00000620845 1019 ntBASIC21.19■□□□□ 0.98
NPHP4O75161 DDX5-235ENST00000630471 473 ntTSL 4 BASIC21.19■□□□□ 0.98
NPHP4O75161 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPHP4O75161 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms