Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 MST1L-201ENST00000442552 2185 ntBASIC14.6□□□□□ -0.07
LDB3O75112 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.59□□□□□ -0.07
LDB3O75112 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
LDB3O75112 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 MYCLP2-201ENST00000449268 967 ntBASIC14.59□□□□□ -0.07
LDB3O75112 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.59□□□□□ -0.07
LDB3O75112 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
LDB3O75112 AL049840.4-201ENST00000602422 811 ntBASIC14.59□□□□□ -0.07
LDB3O75112 AC008494.3-201ENST00000606615 944 ntBASIC14.59□□□□□ -0.07
LDB3O75112 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
LDB3O75112 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.59□□□□□ -0.07
LDB3O75112 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
LDB3O75112 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.59□□□□□ -0.07
LDB3O75112 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
LDB3O75112 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.58□□□□□ -0.07
LDB3O75112 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
LDB3O75112 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.58□□□□□ -0.08
LDB3O75112 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
LDB3O75112 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.58□□□□□ -0.08
LDB3O75112 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
LDB3O75112 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 RPL5P21-201ENST00000404620 815 ntBASIC14.58□□□□□ -0.08
LDB3O75112 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.58□□□□□ -0.08
LDB3O75112 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 CRB3P1-201ENST00000449338 276 ntBASIC14.58□□□□□ -0.08
LDB3O75112 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.58□□□□□ -0.08
LDB3O75112 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
LDB3O75112 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.58□□□□□ -0.08
LDB3O75112 AL109954.1-202ENST00000564051 2148 ntBASIC14.58□□□□□ -0.08
LDB3O75112 WASH4P-201ENST00000564273 1246 ntBASIC14.58□□□□□ -0.08
LDB3O75112 AC140912.1-201ENST00000577171 1054 ntBASIC14.58□□□□□ -0.08
LDB3O75112 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.58□□□□□ -0.08
LDB3O75112 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
LDB3O75112 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LDB3O75112 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms