Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 RPSAP43-201ENST00000402237 625 ntBASIC14.97□□□□□ -0.01
SLC28A1O00337 AC074338.1-201ENST00000416825 156 ntBASIC14.97□□□□□ -0.01
SLC28A1O00337 UPF3AP3-201ENST00000420996 769 ntBASIC14.97□□□□□ -0.01
SLC28A1O00337 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
SLC28A1O00337 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.97□□□□□ -0.01
SLC28A1O00337 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 AL033527.5-202ENST00000641632 1098 ntBASIC14.97□□□□□ -0.01
SLC28A1O00337 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
SLC28A1O00337 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.97□□□□□ -0.01
SLC28A1O00337 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.97□□□□□ -0.01
SLC28A1O00337 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SLC28A1O00337 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
SLC28A1O00337 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.96□□□□□ -0.01
SLC28A1O00337 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.96□□□□□ -0.01
SLC28A1O00337 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 AC211486.1-202ENST00000416371 468 ntBASIC14.96□□□□□ -0.01
SLC28A1O00337 BX842568.4-201ENST00000421222 227 ntBASIC14.96□□□□□ -0.01
SLC28A1O00337 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.96□□□□□ -0.01
SLC28A1O00337 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.96□□□□□ -0.01
SLC28A1O00337 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.96□□□□□ -0.01
SLC28A1O00337 AC211476.1-201ENST00000503899 468 ntBASIC14.96□□□□□ -0.01
SLC28A1O00337 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.96□□□□□ -0.01
SLC28A1O00337 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.96□□□□□ -0.01
SLC28A1O00337 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 AL512356.2-201ENST00000546955 174 ntBASIC14.96□□□□□ -0.01
SLC28A1O00337 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.96□□□□□ -0.01
SLC28A1O00337 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.96□□□□□ -0.01
SLC28A1O00337 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
SLC28A1O00337 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.96□□□□□ -0.01
SLC28A1O00337 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
SLC28A1O00337 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.96□□□□□ -0.01
SLC28A1O00337 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
SLC28A1O00337 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SLC28A1O00337 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms