Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 MTHFR-210ENST00000641407 2387 ntBASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMA1Q9UHB6 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 RPL37AP1-201ENST00000412502 279 ntBASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TOMM22P5-201ENST00000416399 439 ntBASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 AC023141.5-201ENST00000458585 616 ntBASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 SERBP1P3-201ENST00000459980 809 ntBASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMA1Q9UHB6 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 SPDYE7P-202ENST00000420373 878 ntBASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AL512356.2-201ENST00000546955 174 ntBASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 LINC01115-203ENST00000606068 577 ntBASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIMA1Q9UHB6 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms