Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AL592309.1-201ENST00000443127 649 ntBASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC025181.2-201ENST00000606994 802 ntBASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 Z97205.2-201ENST00000564697 1639 ntBASIC15.31■□□□□ 0.04
MKS1Q9NXB0 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 AC152010.1-201ENST00000415779 2006 ntBASIC15.31■□□□□ 0.04
MKS1Q9NXB0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MKS1Q9NXB0 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 YBX2P1-201ENST00000394192 760 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 MCCD1P2-201ENST00000423228 335 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 CICP4-201ENST00000447359 2812 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 TPT1P11-201ENST00000458482 498 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ALG1L8P-201ENST00000533887 760 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 AC018529.1-201ENST00000613063 361 ntBASIC15.3■□□□□ 0.04
MKS1Q9NXB0 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MKS1Q9NXB0 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 AC063926.3-201ENST00000624734 5658 ntBASIC15.29■□□□□ 0.04
MKS1Q9NXB0 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MKS1Q9NXB0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms