Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 AC008761.3-201ENST00000624803 892 ntBASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMC4Q9NTJ3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
SMC4Q9NTJ3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
SMC4Q9NTJ3 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SMC4Q9NTJ3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SMC4Q9NTJ3 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
SMC4Q9NTJ3 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 SLC7A15P-201ENST00000424028 1363 ntBASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 RN7SL399P-201ENST00000471648 279 ntBASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 AL132655.2-201ENST00000596276 594 ntBASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMC4Q9NTJ3 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 MEP1AP4-201ENST00000423244 1087 ntBASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 AC004233.3-201ENST00000607794 1269 ntBASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMC4Q9NTJ3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 AC007541.1-201ENST00000570282 1469 ntBASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 MIR8072-201ENST00000614241 80 ntBASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMC4Q9NTJ3 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms