Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 AC007292.2-201ENST00000593524 1812 ntBASIC16.59■□□□□ 0.25
SIX2Q9NPC8 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SIX2Q9NPC8 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
SIX2Q9NPC8 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC092183.1-201ENST00000469884 875 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RFPL4AP1-201ENST00000530883 850 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC023310.3-201ENST00000557027 670 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC100756.1-201ENST00000562736 682 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC138749.3-201ENST00000567691 622 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC116165.1-201ENST00000611806 668 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AL662799.1-202ENST00000614205 422 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms