Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 BRWD1P1-201ENST00000401091 371 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 AC012441.1-201ENST00000446669 685 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 KRT18P43-201ENST00000469825 1281 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 FTH1P14-201ENST00000482930 551 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 AC000095.1-201ENST00000603208 874 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 MIR6869-201ENST00000619434 62 ntBASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TM9SF3Q9HD45 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AL121723.1-201ENST00000445194 1519 ntBASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AC093433.1-201ENST00000458048 571 ntBASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AC106760.1-201ENST00000508690 800 ntBASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 GPR182-203ENST00000622922 591 ntBASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.54■□□□□ 0.08
TM9SF3Q9HD45 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TM9SF3Q9HD45 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms