Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 NHP2-202ENST00000314397 599 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL12A1Q99715 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL12A1Q99715 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 IGKV1OR-2-201ENST00000457995 350 ntBASIC13.26□□□□□ -0.29
COL12A1Q99715 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
COL12A1Q99715 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC13.26□□□□□ -0.29
COL12A1Q99715 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
COL12A1Q99715 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL12A1Q99715 AC009090.5-201ENST00000624886 2285 ntBASIC13.25□□□□□ -0.29
COL12A1Q99715 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 BCAS2P2-201ENST00000425064 674 ntBASIC13.25□□□□□ -0.29
COL12A1Q99715 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.25□□□□□ -0.29
COL12A1Q99715 AC108724.1-201ENST00000481669 352 ntBASIC13.25□□□□□ -0.29
COL12A1Q99715 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.25□□□□□ -0.29
COL12A1Q99715 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.25□□□□□ -0.29
COL12A1Q99715 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
COL12A1Q99715 AC055811.3-201ENST00000584952 686 ntBASIC13.25□□□□□ -0.29
COL12A1Q99715 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL12A1Q99715 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL12A1Q99715 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.25□□□□□ -0.29
COL12A1Q99715 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
COL12A1Q99715 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 AC239868.1-201ENST00000369385 493 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 RPL8P2-201ENST00000430538 502 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 AC023141.7-201ENST00000430646 407 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 AC026320.2-201ENST00000434379 478 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 AC093909.3-201ENST00000504783 336 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC13.24□□□□□ -0.29
COL12A1Q99715 RPS5-204ENST00000598098 536 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 AL451007.2-201ENST00000632004 563 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC13.24□□□□□ -0.29
COL12A1Q99715 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A7P-201ENST00000382628 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A23P-201ENST00000400136 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A21P-201ENST00000510875 1396 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A15P-201ENST00000514465 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A6P-201ENST00000515148 1394 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A16P-201ENST00000526662 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A9P-201ENST00000527940 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A5P-201ENST00000528738 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A14P-201ENST00000530386 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 FAM90A13P-201ENST00000534703 1395 ntBASIC13.24□□□□□ -0.29
COL12A1Q99715 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.24□□□□□ -0.29
COL12A1Q99715 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms