Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 EIF3FP3-201ENST00000434851 1086 ntBASIC15.7■□□□□ 0.1
CHFRQ96EP1 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 AC004898.1-201ENST00000451057 766 ntBASIC15.7■□□□□ 0.1
CHFRQ96EP1 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 RNA5SP423-201ENST00000517127 109 ntBASIC15.7■□□□□ 0.1
CHFRQ96EP1 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 AL023775.1-201ENST00000454907 1746 ntBASIC15.7■□□□□ 0.1
CHFRQ96EP1 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 AC007787.1-201ENST00000588095 1583 ntBASIC15.7■□□□□ 0.1
CHFRQ96EP1 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CHFRQ96EP1 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CHFRQ96EP1 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AL139094.1-201ENST00000405549 1188 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 MIR663B-201ENST00000408361 115 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 HSPB1P2-201ENST00000448722 546 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 IGHJ2P-201ENST00000454480 60 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AKR7A2P1-201ENST00000460134 915 ntBASIC15.69■□□□□ 0.1
CHFRQ96EP1 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.69■□□□□ 0.1
CHFRQ96EP1 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CHFRQ96EP1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 LRRC59-203ENST00000576448 1531 ntBASIC15.68■□□□□ 0.1
CHFRQ96EP1 AL158070.2-201ENST00000623713 1621 ntBASIC15.68■□□□□ 0.1
CHFRQ96EP1 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CHFRQ96EP1 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 NUS1P3-201ENST00000423502 862 ntBASIC15.68■□□□□ 0.1
CHFRQ96EP1 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 BX284668.4-201ENST00000453917 508 ntBASIC15.68■□□□□ 0.1
CHFRQ96EP1 HIST2H2BC-201ENST00000498492 580 ntBASIC15.68■□□□□ 0.1
CHFRQ96EP1 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.68■□□□□ 0.1
CHFRQ96EP1 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms