Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 AC104596.2-201ENST00000512793 793 ntBASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 WASH4P-201ENST00000564273 1246 ntBASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLIP3Q96DZ5 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC007686.3-201ENST00000619017 3487 ntBASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC134407.2-201ENST00000625089 1978 ntBASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC093726.1-201ENST00000608064 963 ntBASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC099568.2-201ENST00000609194 695 ntBASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 Z97205.2-201ENST00000564697 1639 ntBASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
CLIP3Q96DZ5 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms