Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 RPL5P21-201ENST00000404620 815 ntBASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 ZNF890P-202ENST00000530367 1156 ntBASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 TP53TG3HP-202ENST00000569755 579 ntBASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AC074044.1-201ENST00000609673 707 ntBASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 AL607033.1-201ENST00000623900 1599 ntBASIC18.55■□□□□ 0.56
CHMP4CQ96CF2 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AC127383.1-201ENST00000444697 1800 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AL353779.1-201ENST00000434793 351 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AC140912.1-201ENST00000577171 1054 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 CTBP2P3-201ENST00000585629 1255 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 SLC7A15P-201ENST00000424028 1363 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 AC136621.1-201ENST00000624017 2304 ntBASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CHMP4CQ96CF2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 PPT1-215ENST00000641471 2368 ntBASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms