Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 FAM90A2P-201ENST00000511144 1395 ntBASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 FAM90A25P-201ENST00000528404 1395 ntBASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AL592076.1-201ENST00000424448 303 ntBASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 PSMD4P1-201ENST00000433951 1109 ntBASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 RN7SL67P-201ENST00000492147 296 ntBASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SMC1BQ8NDV3 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 PCDHA12-202ENST00000613593 2588 ntBASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AP003398.1-201ENST00000531124 318 ntBASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AC100827.2-201ENST00000563214 1194 ntBASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 RPL17P45-201ENST00000586289 509 ntBASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 GGT3P-204ENST00000453783 1664 ntBASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SMC1BQ8NDV3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SMC1BQ8NDV3 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 AL139094.1-201ENST00000405549 1188 ntBASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SMC1BQ8NDV3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms