Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SAMD11P1-201ENST00000571429 661 ntBASIC19.12■□□□□ 0.65
SYNE4Q8N205 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SYNE4Q8N205 AC105250.1-201ENST00000509378 2057 ntBASIC19.12■□□□□ 0.65
SYNE4Q8N205 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
SYNE4Q8N205 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 UPF3AP2-201ENST00000457924 1132 ntBASIC19.11■□□□□ 0.65
SYNE4Q8N205 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AL391280.1-201ENST00000506969 1062 ntBASIC19.11■□□□□ 0.65
SYNE4Q8N205 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC073413.1-201ENST00000603927 732 ntBASIC19.11■□□□□ 0.65
SYNE4Q8N205 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SYNE4Q8N205 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.11■□□□□ 0.65
SYNE4Q8N205 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 B9D1-203ENST00000395615 805 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.1■□□□□ 0.65
SYNE4Q8N205 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC19.1■□□□□ 0.65
SYNE4Q8N205 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SYNE4Q8N205 AP005117.1-202ENST00000581724 1908 ntBASIC19.1■□□□□ 0.65
SYNE4Q8N205 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE4Q8N205 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.09■□□□□ 0.65
SYNE4Q8N205 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.09■□□□□ 0.65
SYNE4Q8N205 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SYNE4Q8N205 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.09■□□□□ 0.65
SYNE4Q8N205 SNX21-203ENST00000372541 771 ntTSL 2 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms