Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 RN7SL399P-201ENST00000471648 279 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC104596.2-201ENST00000512793 793 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC036164.1-201ENST00000570544 333 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC015910.1-201ENST00000579400 975 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC027307.3-201ENST00000594262 1100 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AL391069.4-201ENST00000609583 481 ntBASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NUP54Q7Z3B4 AC127383.1-201ENST00000444697 1800 ntBASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC087481.3-201ENST00000602886 1894 ntBASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AL121723.1-201ENST00000445194 1519 ntBASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 API5-211ENST00000534695 560 ntTSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC000095.1-201ENST00000603208 874 ntBASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 AC006058.4-201ENST00000624016 1670 ntBASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NUP54Q7Z3B4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 AC090616.6-203ENST00000579186 1945 ntBASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.37□□□□□ -0.11
NUP54Q7Z3B4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms