Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 AC128714.1-201ENST00000637035 887 ntBASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CSB-PGBD3P0DP91 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 TUBBP5-203ENST00000508529 1334 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 RPS2P36-201ENST00000456516 831 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 FTLP10-202ENST00000505798 471 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 AC022616.1-201ENST00000518688 554 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 RN7SL774P-201ENST00000577467 290 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.36■□□□□ 0.85
CSB-PGBD3P0DP91 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AL354877.1-201ENST00000424412 413 ntBASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AC134698.3-201ENST00000523880 214 ntBASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 NAT9-224ENST00000583757 583 ntTSL 3 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 AC069224.1-201ENST00000566372 1715 ntBASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CSB-PGBD3P0DP91 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CSB-PGBD3P0DP91 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms