Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AL590640.2-201ENST00000457038 527 ntBASIC18.2■□□□□ 0.5
HLA-DOAP06340 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 SAMD11P1-201ENST00000571429 661 ntBASIC18.2■□□□□ 0.5
HLA-DOAP06340 RN7SL560P-201ENST00000577943 264 ntBASIC18.2■□□□□ 0.5
HLA-DOAP06340 RN7SL48P-201ENST00000579283 293 ntBASIC18.2■□□□□ 0.5
HLA-DOAP06340 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 CICP13-201ENST00000422015 2789 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 TPM3P8-201ENST00000330554 643 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 KRT8P14-201ENST00000414254 1442 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 PFN1P12-201ENST00000455938 534 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 FAM8A2P-201ENST00000528813 1142 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 AC006453.4-201ENST00000636949 1252 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 PRAL-201ENST00000624952 3286 ntBASIC18.19■□□□□ 0.5
HLA-DOAP06340 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DOAP06340 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DOAP06340 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 CD8B2-202ENST00000417670 633 ntBASIC18.18■□□□□ 0.5
HLA-DOAP06340 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 RIT1-205ENST00000539040 919 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DOAP06340 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DOAP06340 MIR6869-201ENST00000619434 62 ntBASIC18.18■□□□□ 0.5
HLA-DOAP06340 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms