Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL4A1P02462 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.55■□□□□ 0.56
COL4A1P02462 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL4A1P02462 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.55■□□□□ 0.56
COL4A1P02462 SHC1P1-201ENST00000425230 1745 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL4A1P02462 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC245884.6-201ENST00000515672 1067 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A1P02462 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A1P02462 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL4A1P02462 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A1P02462 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC087481.3-201ENST00000602886 1894 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC244394.1-201ENST00000435000 1665 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 KRT8P29-201ENST00000420409 1371 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A1P02462 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A1P02462 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 NAT9-224ENST00000583757 583 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A1P02462 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A1P02462 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A1P02462 AL136301.1-201ENST00000615830 422 ntBASIC18.54■□□□□ 0.56
COL4A1P02462 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
COL4A1P02462 C18orf15-201ENST00000623680 2534 ntBASIC18.53■□□□□ 0.56
COL4A1P02462 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL4A1P02462 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL4A1P02462 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.53■□□□□ 0.56
COL4A1P02462 ELK2AP-201ENST00000392510 1007 ntBASIC18.53■□□□□ 0.56
COL4A1P02462 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.53■□□□□ 0.56
COL4A1P02462 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 AC079336.7-201ENST00000623428 1078 ntBASIC18.53■□□□□ 0.56
COL4A1P02462 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
COL4A1P02462 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL4A1P02462 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A1P02462 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
COL4A1P02462 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A1P02462 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A1P02462 MBLAC2-202ENST00000514906 1936 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 AC013726.1-201ENST00000563747 2285 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A1P02462 AC003102.2-201ENST00000589195 1469 ntBASIC18.52■□□□□ 0.56
COL4A1P02462 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms