Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA1O95477 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA1O95477 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC13.08□□□□□ -0.31
ABCA1O95477 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
ABCA1O95477 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.08□□□□□ -0.31
ABCA1O95477 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
ABCA1O95477 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.08□□□□□ -0.31
ABCA1O95477 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.08□□□□□ -0.32
ABCA1O95477 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 FAM86LP-201ENST00000478302 853 ntBASIC13.08□□□□□ -0.32
ABCA1O95477 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 AC124283.3-201ENST00000570869 594 ntBASIC13.08□□□□□ -0.32
ABCA1O95477 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.08□□□□□ -0.32
ABCA1O95477 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
ABCA1O95477 AC016694.1-201ENST00000434179 700 ntBASIC13.08□□□□□ -0.32
ABCA1O95477 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
ABCA1O95477 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.08□□□□□ -0.32
ABCA1O95477 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA1O95477 FLJ16779-201ENST00000612722 7638 ntBASIC13.07□□□□□ -0.32
ABCA1O95477 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.07□□□□□ -0.32
ABCA1O95477 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
ABCA1O95477 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.07□□□□□ -0.32
ABCA1O95477 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.07□□□□□ -0.32
ABCA1O95477 SOCS2P1-201ENST00000417727 557 ntBASIC13.07□□□□□ -0.32
ABCA1O95477 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.07□□□□□ -0.32
ABCA1O95477 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.07□□□□□ -0.32
ABCA1O95477 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.07□□□□□ -0.32
ABCA1O95477 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 AL022328.3-201ENST00000607943 679 ntBASIC13.07□□□□□ -0.32
ABCA1O95477 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
ABCA1O95477 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.07□□□□□ -0.32
ABCA1O95477 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
ABCA1O95477 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
ABCA1O95477 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
ABCA1O95477 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA1O95477 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA1O95477 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA1O95477 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA1O95477 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA1O95477 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
ABCA1O95477 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.06□□□□□ -0.32
ABCA1O95477 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.06□□□□□ -0.32
ABCA1O95477 BAATP1-201ENST00000412284 1225 ntBASIC13.06□□□□□ -0.32
ABCA1O95477 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms