Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
SIX3O95343 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.21■□□□□ 0.03
SIX3O95343 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.21■□□□□ 0.03
SIX3O95343 SLED1-202ENST00000512051 380 ntBASIC15.21■□□□□ 0.03
SIX3O95343 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 AC109322.1-201ENST00000524499 1264 ntBASIC15.21■□□□□ 0.03
SIX3O95343 AC069262.1-201ENST00000539058 672 ntBASIC15.21■□□□□ 0.03
SIX3O95343 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.21■□□□□ 0.03
SIX3O95343 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
SIX3O95343 AF228730.6-201ENST00000641497 218 ntBASIC15.21■□□□□ 0.03
SIX3O95343 AC084121.3-201ENST00000641716 218 ntBASIC15.21■□□□□ 0.03
SIX3O95343 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SIX3O95343 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
SIX3O95343 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SIX3O95343 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SIX3O95343 Z97205.2-201ENST00000564697 1639 ntBASIC15.21■□□□□ 0.02
SIX3O95343 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SIX3O95343 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.2■□□□□ 0.02
SIX3O95343 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.2■□□□□ 0.02
SIX3O95343 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.2■□□□□ 0.02
SIX3O95343 SNHG9-202ENST00000564014 471 ntBASIC15.2■□□□□ 0.02
SIX3O95343 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.2■□□□□ 0.02
SIX3O95343 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 FAM45BP-202ENST00000592932 1624 ntBASIC15.2■□□□□ 0.02
SIX3O95343 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
SIX3O95343 PKD1P5-201ENST00000532415 10291 ntBASIC15.2■□□□□ 0.02
SIX3O95343 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SIX3O95343 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SIX3O95343 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.19■□□□□ 0.02
SIX3O95343 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.19■□□□□ 0.02
SIX3O95343 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SIX3O95343 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms