Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LMX1BO60663 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
LMX1BO60663 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LMX1BO60663 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.71□□□□□ -0.22
LMX1BO60663 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.71□□□□□ -0.22
LMX1BO60663 AC022144.1-201ENST00000602255 1580 ntBASIC13.71□□□□□ -0.22
LMX1BO60663 AL607033.1-201ENST00000623900 1599 ntBASIC13.71□□□□□ -0.22
LMX1BO60663 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
LMX1BO60663 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
LMX1BO60663 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LMX1BO60663 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.7□□□□□ -0.22
LMX1BO60663 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 MRPS18AP1-201ENST00000414458 589 ntBASIC13.7□□□□□ -0.22
LMX1BO60663 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 AC007274.1-201ENST00000439805 662 ntBASIC13.7□□□□□ -0.22
LMX1BO60663 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.7□□□□□ -0.22
LMX1BO60663 RARRES2P9-201ENST00000565168 469 ntBASIC13.7□□□□□ -0.22
LMX1BO60663 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.7□□□□□ -0.22
LMX1BO60663 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
LMX1BO60663 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
LMX1BO60663 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.7□□□□□ -0.22
LMX1BO60663 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
LMX1BO60663 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
LMX1BO60663 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC126365.1-201ENST00000578585 1514 ntBASIC13.69□□□□□ -0.22
LMX1BO60663 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC023908.3-201ENST00000564211 3047 ntBASIC13.69□□□□□ -0.22
LMX1BO60663 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.69□□□□□ -0.22
LMX1BO60663 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 AL009178.2-201ENST00000597278 2719 ntBASIC13.69□□□□□ -0.22
LMX1BO60663 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 EEF1DP4-201ENST00000446006 880 ntBASIC13.69□□□□□ -0.22
LMX1BO60663 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.69□□□□□ -0.22
LMX1BO60663 MAX-210ENST00000555419 765 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.69□□□□□ -0.22
LMX1BO60663 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
LMX1BO60663 AC063926.3-201ENST00000624734 5658 ntBASIC13.69□□□□□ -0.22
LMX1BO60663 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
LMX1BO60663 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
LMX1BO60663 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms