Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
NPHP1O15259 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP1O15259 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
NPHP1O15259 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP1O15259 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 AL133267.1-201ENST00000398220 340 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 AC004945.1-201ENST00000416738 983 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 IGHJ2P-201ENST00000454480 60 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.56■□□□□ 0.72
NPHP1O15259 AC015910.1-201ENST00000579400 975 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 AC244452.3-201ENST00000636814 210 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 AL162727.3-201ENST00000635661 2787 ntBASIC19.56■□□□□ 0.72
NPHP1O15259 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
NPHP1O15259 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
NPHP1O15259 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP1O15259 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP1O15259 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP1O15259 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP1O15259 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.55■□□□□ 0.72
NPHP1O15259 AC092506.1-202ENST00000401022 528 ntBASIC19.55■□□□□ 0.72
NPHP1O15259 SUN1-204ENST00000403868 978 ntTSL 2 BASIC19.55■□□□□ 0.72
NPHP1O15259 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NPHP1O15259 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.55■□□□□ 0.72
NPHP1O15259 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.55■□□□□ 0.72
NPHP1O15259 BX539320.1-201ENST00000623759 877 ntBASIC19.55■□□□□ 0.72
NPHP1O15259 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP1O15259 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC19.55■□□□□ 0.72
NPHP1O15259 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NPHP1O15259 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
NPHP1O15259 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPHP1O15259 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
NPHP1O15259 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
NPHP1O15259 AC106886.4-201ENST00000623557 2502 ntBASIC19.54■□□□□ 0.72
NPHP1O15259 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms