Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15□□□□□ -0.01
SLC28A1O00337 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SLC28A1O00337 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
SLC28A1O00337 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
SLC28A1O00337 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15□□□□□ -0.01
SLC28A1O00337 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.99□□□□□ -0.01
SLC28A1O00337 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SLC28A1O00337 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SLC28A1O00337 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 GHSR-202ENST00000427970 912 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.99□□□□□ -0.01
SLC28A1O00337 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
SLC28A1O00337 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.99□□□□□ -0.01
SLC28A1O00337 AC106881.1-201ENST00000605849 3329 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.99□□□□□ -0.01
SLC28A1O00337 Z97205.2-201ENST00000564697 1639 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 AJ011931.1-201ENST00000618749 2492 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.99□□□□□ -0.01
SLC28A1O00337 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SLC28A1O00337 AL390755.1-201ENST00000623716 2027 ntBASIC14.99□□□□□ -0.01
SLC28A1O00337 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.98□□□□□ -0.01
SLC28A1O00337 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AL133267.1-201ENST00000398220 340 ntBASIC14.98□□□□□ -0.01
SLC28A1O00337 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.98□□□□□ -0.01
SLC28A1O00337 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC010327.4-202ENST00000591484 748 ntBASIC14.98□□□□□ -0.01
SLC28A1O00337 AC011467.4-201ENST00000594891 528 ntBASIC14.98□□□□□ -0.01
SLC28A1O00337 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.98□□□□□ -0.01
SLC28A1O00337 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SLC28A1O00337 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SLC28A1O00337 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms