Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TMX2-CTNND1H3BSU7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC023157.3-201ENST00000619086 2088 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC098850.1-201ENST00000419919 790 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL442647.2-201ENST00000429864 857 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRT223P-202ENST00000449164 1292 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 BTNL10-201ENST00000595971 695 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC133539.2-201ENST00000604757 467 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 GGT3P-204ENST00000453783 1664 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL136982.4-201ENST00000437689 1740 ntBASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TMX2-CTNND1H3BSU7 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 RPL13AP25-201ENST00000484130 612 ntBASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 KRT8P22-201ENST00000562317 1415 ntBASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 AL691432.1-201ENST00000596308 1422 ntBASIC15.3■□□□□ 0.04
TMX2-CTNND1H3BSU7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms