Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.42■■□□□ 1.66
PCDHA11Q9Y5I1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 MIR939-201ENST00000401314 82 ntBASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHA11Q9Y5I1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
PCDHA11Q9Y5I1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDHA11Q9Y5I1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.39■■□□□ 1.66
PCDHA11Q9Y5I1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.39■■□□□ 1.66
PCDHA11Q9Y5I1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.39■■□□□ 1.65
PCDHA11Q9Y5I1 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDHA11Q9Y5I1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHA11Q9Y5I1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 AL162430.1-201ENST00000480705 870 ntBASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 AP001330.3-201ENST00000520123 633 ntBASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHA11Q9Y5I1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHA11Q9Y5I1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA11Q9Y5I1 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.36■■□□□ 1.65
PCDHA11Q9Y5I1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.36■■□□□ 1.65
PCDHA11Q9Y5I1 DUX4L19-201ENST00000557448 1267 ntBASIC25.36■■□□□ 1.65
PCDHA11Q9Y5I1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 AC091305.1-201ENST00000479476 895 ntBASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 AC087623.3-201ENST00000607047 1098 ntBASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.35■■□□□ 1.65
PCDHA11Q9Y5I1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 AC004448.1-201ENST00000458332 883 ntBASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.34■■□□□ 1.65
PCDHA11Q9Y5I1 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHA11Q9Y5I1 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
PCDHA11Q9Y5I1 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.32■■□□□ 1.64
PCDHA11Q9Y5I1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHA11Q9Y5I1 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.3■■□□□ 1.64
PCDHA11Q9Y5I1 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHA11Q9Y5I1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHA11Q9Y5I1 FOXO3B-201ENST00000395675 1928 ntBASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHA11Q9Y5I1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms