Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
AP4S1Q9Y587 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.88■■□□□ 1.09
AP4S1Q9Y587 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4S1Q9Y587 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
AP4S1Q9Y587 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.88■■□□□ 1.09
AP4S1Q9Y587 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
AP4S1Q9Y587 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
AP4S1Q9Y587 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.86■■□□□ 1.09
AP4S1Q9Y587 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.85■■□□□ 1.09
AP4S1Q9Y587 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4S1Q9Y587 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.84■■□□□ 1.09
AP4S1Q9Y587 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
AP4S1Q9Y587 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
AP4S1Q9Y587 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
AP4S1Q9Y587 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
AP4S1Q9Y587 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
AP4S1Q9Y587 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
AP4S1Q9Y587 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.82■■□□□ 1.08
AP4S1Q9Y587 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
AP4S1Q9Y587 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
AP4S1Q9Y587 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L13-201ENST00000554103 1267 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L15-201ENST00000611059 1267 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L23-201ENST00000615195 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L24-201ENST00000617576 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L22-201ENST00000618238 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L20-201ENST00000619712 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L21-201ENST00000622058 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L10-201ENST00000622460 1267 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 DUX4L25-201ENST00000624915 1269 ntBASIC21.79■■□□□ 1.08
AP4S1Q9Y587 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.79■■□□□ 1.08
AP4S1Q9Y587 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms