Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPH3AQ9Y2J0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 BX664725.1-201ENST00000438252 379 ntBASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.17■□□□□ 0.98
RPH3AQ9Y2J0 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPH3AQ9Y2J0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPH3AQ9Y2J0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPH3AQ9Y2J0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPH3AQ9Y2J0 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPH3AQ9Y2J0 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RPH3AQ9Y2J0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPH3AQ9Y2J0 GUSBP5-201ENST00000418136 578 ntBASIC21.14■□□□□ 0.97
RPH3AQ9Y2J0 KRT125P-201ENST00000546827 989 ntBASIC21.14■□□□□ 0.97
RPH3AQ9Y2J0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.14■□□□□ 0.97
RPH3AQ9Y2J0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
RPH3AQ9Y2J0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RPH3AQ9Y2J0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
RPH3AQ9Y2J0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 Z92544.1-202ENST00000571933 1220 ntBASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 AC137630.3-201ENST00000607245 391 ntBASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RPH3AQ9Y2J0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 AC138932.3-201ENST00000567634 1902 ntBASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.11■□□□□ 0.97
RPH3AQ9Y2J0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 MIR4787-201ENST00000607364 84 ntBASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 MIR6089-201ENST00000616698 64 ntBASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.1■□□□□ 0.97
RPH3AQ9Y2J0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 AP003733.4-201ENST00000623785 1697 ntBASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RPH3AQ9Y2J0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RPH3AQ9Y2J0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms