Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COMMD3Q9UBI1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COMMD3Q9UBI1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
COMMD3Q9UBI1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COMMD3Q9UBI1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COMMD3Q9UBI1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COMMD3Q9UBI1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
COMMD3Q9UBI1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
COMMD3Q9UBI1 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
COMMD3Q9UBI1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.33■□□□□ 0.85
COMMD3Q9UBI1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
COMMD3Q9UBI1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COMMD3Q9UBI1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COMMD3Q9UBI1 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
COMMD3Q9UBI1 MIR219A2-201ENST00000608502 1504 ntBASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 MIR6089-201ENST00000616698 64 ntBASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
COMMD3Q9UBI1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COMMD3Q9UBI1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COMMD3Q9UBI1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 HLA-L-211ENST00000482052 1765 ntBASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COMMD3Q9UBI1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COMMD3Q9UBI1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COMMD3Q9UBI1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.27■□□□□ 0.83
COMMD3Q9UBI1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.26■□□□□ 0.83
COMMD3Q9UBI1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.25■□□□□ 0.83
COMMD3Q9UBI1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms