Protein–RNA interactions for Protein: Q9NP99

TREM1, Triggering receptor expressed on myeloid cells 1, humanhuman

Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREM1Q9NP99 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
TREM1Q9NP99 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TREM1Q9NP99 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.84■□□□□ 0.61
TREM1Q9NP99 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC18.84■□□□□ 0.61
TREM1Q9NP99 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TREM1Q9NP99 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TREM1Q9NP99 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.84■□□□□ 0.61
TREM1Q9NP99 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TREM1Q9NP99 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.83■□□□□ 0.61
TREM1Q9NP99 AC007375.3-201ENST00000600936 2314 ntBASIC18.83■□□□□ 0.61
TREM1Q9NP99 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TREM1Q9NP99 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TREM1Q9NP99 MIR762-201ENST00000390236 83 ntBASIC18.83■□□□□ 0.6
TREM1Q9NP99 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TREM1Q9NP99 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TREM1Q9NP99 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
TREM1Q9NP99 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TREM1Q9NP99 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TREM1Q9NP99 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.82■□□□□ 0.6
TREM1Q9NP99 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TREM1Q9NP99 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TREM1Q9NP99 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.82■□□□□ 0.6
TREM1Q9NP99 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TREM1Q9NP99 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TREM1Q9NP99 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TREM1Q9NP99 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TREM1Q9NP99 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TREM1Q9NP99 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TREM1Q9NP99 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
TREM1Q9NP99 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.8■□□□□ 0.6
TREM1Q9NP99 AC004812.2-201ENST00000611079 2094 ntBASIC18.8■□□□□ 0.6
TREM1Q9NP99 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TREM1Q9NP99 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.8■□□□□ 0.6
TREM1Q9NP99 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TREM1Q9NP99 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TREM1Q9NP99 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 AC135983.2-203ENST00000454486 1613 ntBASIC18.79■□□□□ 0.6
TREM1Q9NP99 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC18.79■□□□□ 0.6
TREM1Q9NP99 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TREM1Q9NP99 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.79■□□□□ 0.6
TREM1Q9NP99 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TREM1Q9NP99 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC18.79■□□□□ 0.6
TREM1Q9NP99 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.79■□□□□ 0.6
TREM1Q9NP99 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TREM1Q9NP99 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TREM1Q9NP99 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TREM1Q9NP99 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TREM1Q9NP99 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.77■□□□□ 0.6
TREM1Q9NP99 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.77■□□□□ 0.6
TREM1Q9NP99 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
TREM1Q9NP99 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.77■□□□□ 0.6
TREM1Q9NP99 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TREM1Q9NP99 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TREM1Q9NP99 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TREM1Q9NP99 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TREM1Q9NP99 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
TREM1Q9NP99 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TREM1Q9NP99 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TREM1Q9NP99 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TREM1Q9NP99 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TREM1Q9NP99 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.76■□□□□ 0.59
TREM1Q9NP99 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TREM1Q9NP99 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TREM1Q9NP99 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TREM1Q9NP99 LINC00526-201ENST00000581067 1875 ntBASIC18.75■□□□□ 0.59
TREM1Q9NP99 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.75■□□□□ 0.59
TREM1Q9NP99 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.75■□□□□ 0.59
TREM1Q9NP99 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TREM1Q9NP99 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TREM1Q9NP99 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TREM1Q9NP99 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.75■□□□□ 0.59
TREM1Q9NP99 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.75■□□□□ 0.59
TREM1Q9NP99 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TREM1Q9NP99 AC127496.7-201ENST00000625110 1798 ntBASIC18.75■□□□□ 0.59
TREM1Q9NP99 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TREM1Q9NP99 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.74■□□□□ 0.59
TREM1Q9NP99 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms