Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.56■□□□□ 0.56
CLRN3Q8NCR9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.55■□□□□ 0.56
CLRN3Q8NCR9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CLRN3Q8NCR9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CLRN3Q8NCR9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CLRN3Q8NCR9 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CLRN3Q8NCR9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLRN3Q8NCR9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CLRN3Q8NCR9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLRN3Q8NCR9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.51■□□□□ 0.55
CLRN3Q8NCR9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 GUSBP5-202ENST00000510805 1989 ntBASIC18.5■□□□□ 0.55
CLRN3Q8NCR9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 AL031258.1-201ENST00000623562 325 ntBASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 ECEL1P1-201ENST00000373592 1742 ntBASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLRN3Q8NCR9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLRN3Q8NCR9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CLRN3Q8NCR9 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CLRN3Q8NCR9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms