Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.96■■■□□ 2.55
USHBP1Q8N6Y0 UNC93B3-201ENST00000308076 687 ntBASIC30.95■■■□□ 2.55
USHBP1Q8N6Y0 AC133561.4-201ENST00000566112 224 ntBASIC30.95■■■□□ 2.55
USHBP1Q8N6Y0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.95■■■□□ 2.55
USHBP1Q8N6Y0 AC106739.1-201ENST00000617035 715 ntBASIC30.95■■■□□ 2.55
USHBP1Q8N6Y0 AC092803.2-201ENST00000564287 1899 ntBASIC30.95■■■□□ 2.54
USHBP1Q8N6Y0 ZNRF2P3-201ENST00000424200 374 ntBASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
USHBP1Q8N6Y0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.93■■■□□ 2.54
USHBP1Q8N6Y0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
USHBP1Q8N6Y0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC30.92■■■□□ 2.54
USHBP1Q8N6Y0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
USHBP1Q8N6Y0 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
USHBP1Q8N6Y0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.91■■■□□ 2.54
USHBP1Q8N6Y0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USHBP1Q8N6Y0 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
USHBP1Q8N6Y0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USHBP1Q8N6Y0 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
USHBP1Q8N6Y0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
USHBP1Q8N6Y0 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
USHBP1Q8N6Y0 AL031432.3-201ENST00000607698 485 ntBASIC30.9■■■□□ 2.54
USHBP1Q8N6Y0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.9■■■□□ 2.54
USHBP1Q8N6Y0 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 AC004448.1-201ENST00000458332 883 ntBASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.89■■■□□ 2.54
USHBP1Q8N6Y0 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 AL136162.1-201ENST00000607711 1078 ntBASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
USHBP1Q8N6Y0 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
USHBP1Q8N6Y0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.86■■■□□ 2.53
USHBP1Q8N6Y0 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.86■■■□□ 2.53
USHBP1Q8N6Y0 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC30.86■■■□□ 2.53
USHBP1Q8N6Y0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC30.86■■■□□ 2.53
USHBP1Q8N6Y0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
USHBP1Q8N6Y0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
USHBP1Q8N6Y0 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
USHBP1Q8N6Y0 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
USHBP1Q8N6Y0 AC142381.2-201ENST00000566120 298 ntBASIC30.85■■■□□ 2.53
USHBP1Q8N6Y0 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.85■■■□□ 2.53
USHBP1Q8N6Y0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USHBP1Q8N6Y0 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 SRD5A1P1-201ENST00000442297 786 ntBASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 AC024257.2-201ENST00000549699 147 ntBASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USHBP1Q8N6Y0 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
USHBP1Q8N6Y0 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
USHBP1Q8N6Y0 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
USHBP1Q8N6Y0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC30.82■■■□□ 2.52
USHBP1Q8N6Y0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
USHBP1Q8N6Y0 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 AC135279.3-201ENST00000610945 1311 ntBASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 SUDS3P1-201ENST00000505831 966 ntBASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USHBP1Q8N6Y0 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 SLC6A10P-202ENST00000431994 2058 ntBASIC30.8■■■□□ 2.52
USHBP1Q8N6Y0 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
USHBP1Q8N6Y0 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms