Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26■■□□□ 1.75
CCDC60Q8IWA6 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
CCDC60Q8IWA6 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.99■■□□□ 1.75
CCDC60Q8IWA6 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC60Q8IWA6 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC60Q8IWA6 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.98■■□□□ 1.75
CCDC60Q8IWA6 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 MIR6724-1-201ENST00000616420 92 ntBASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 MIR6724-2-201ENST00000616483 92 ntBASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 MIR6724-4-201ENST00000617390 92 ntBASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 MIR6724-3-201ENST00000622482 92 ntBASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.97■■□□□ 1.75
CCDC60Q8IWA6 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC60Q8IWA6 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC60Q8IWA6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.96■■□□□ 1.75
CCDC60Q8IWA6 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CCDC60Q8IWA6 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.95■■□□□ 1.75
CCDC60Q8IWA6 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 AL117332.1-201ENST00000622628 974 ntBASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CCDC60Q8IWA6 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.94■■□□□ 1.74
CCDC60Q8IWA6 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 CD72-202ENST00000378430 585 ntTSL 3 BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CCDC60Q8IWA6 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC25.92■■□□□ 1.74
CCDC60Q8IWA6 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.91■■□□□ 1.74
CCDC60Q8IWA6 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 AC131274.2-201ENST00000580697 1507 ntBASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 MIR3621-201ENST00000580529 85 ntBASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
CCDC60Q8IWA6 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 AC004448.1-201ENST00000458332 883 ntBASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 MIR6722-201ENST00000617286 78 ntBASIC25.89■■□□□ 1.74
CCDC60Q8IWA6 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.89■■□□□ 1.73
CCDC60Q8IWA6 AC022211.4-201ENST00000625094 2161 ntBASIC25.89■■□□□ 1.73
CCDC60Q8IWA6 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 AC008406.3-201ENST00000620001 1374 ntBASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 AC131281.2-201ENST00000520478 145 ntBASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.88■■□□□ 1.73
CCDC60Q8IWA6 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.88■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms