Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CXCL12P48061 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC23.44■■□□□ 1.34
CXCL12P48061 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CXCL12P48061 MIR4767-201ENST00000582827 78 ntBASIC23.44■■□□□ 1.34
CXCL12P48061 AC087623.3-201ENST00000607047 1098 ntBASIC23.44■■□□□ 1.34
CXCL12P48061 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CXCL12P48061 RASA4CP-201ENST00000424092 1398 ntBASIC23.43■■□□□ 1.34
CXCL12P48061 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CXCL12P48061 AL162430.1-201ENST00000480705 870 ntBASIC23.43■■□□□ 1.34
CXCL12P48061 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
CXCL12P48061 CA15P2-201ENST00000611168 834 ntBASIC23.43■■□□□ 1.34
CXCL12P48061 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.43■■□□□ 1.34
CXCL12P48061 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CXCL12P48061 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
CXCL12P48061 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CXCL12P48061 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.42■■□□□ 1.34
CXCL12P48061 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CXCL12P48061 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.42■■□□□ 1.34
CXCL12P48061 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CXCL12P48061 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CXCL12P48061 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
CXCL12P48061 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
CXCL12P48061 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CXCL12P48061 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.41■■□□□ 1.34
CXCL12P48061 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CXCL12P48061 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
CXCL12P48061 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CXCL12P48061 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
CXCL12P48061 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CXCL12P48061 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
CXCL12P48061 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
CXCL12P48061 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CXCL12P48061 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.39■■□□□ 1.33
CXCL12P48061 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.39■■□□□ 1.33
CXCL12P48061 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CXCL12P48061 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.39■■□□□ 1.33
CXCL12P48061 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
CXCL12P48061 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.38■■□□□ 1.33
CXCL12P48061 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CXCL12P48061 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CXCL12P48061 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.37■■□□□ 1.33
CXCL12P48061 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CXCL12P48061 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CXCL12P48061 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CXCL12P48061 SERBP1P1-201ENST00000396021 1160 ntBASIC23.37■■□□□ 1.33
CXCL12P48061 AC027682.1-201ENST00000562846 899 ntBASIC23.37■■□□□ 1.33
CXCL12P48061 AC097639.1-201ENST00000565519 1891 ntBASIC23.36■■□□□ 1.33
CXCL12P48061 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
CXCL12P48061 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.36■■□□□ 1.33
CXCL12P48061 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CXCL12P48061 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CXCL12P48061 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
CXCL12P48061 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CXCL12P48061 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.36■■□□□ 1.33
CXCL12P48061 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CXCL12P48061 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 IRS3P-201ENST00000223076 1006 ntBASIC23.35■■□□□ 1.33
CXCL12P48061 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.35■■□□□ 1.33
CXCL12P48061 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.35■■□□□ 1.33
CXCL12P48061 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.35■■□□□ 1.33
CXCL12P48061 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CXCL12P48061 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CXCL12P48061 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.34■■□□□ 1.33
CXCL12P48061 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CXCL12P48061 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.34■■□□□ 1.33
CXCL12P48061 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.34■■□□□ 1.33
CXCL12P48061 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.34■■□□□ 1.33
CXCL12P48061 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CXCL12P48061 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CXCL12P48061 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CXCL12P48061 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CXCL12P48061 AC008764.7-201ENST00000593779 1081 ntBASIC23.33■■□□□ 1.33
CXCL12P48061 AC099791.2-201ENST00000605725 427 ntBASIC23.33■■□□□ 1.33
CXCL12P48061 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CXCL12P48061 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CXCL12P48061 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.32■■□□□ 1.32
CXCL12P48061 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CXCL12P48061 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.32■■□□□ 1.32
CXCL12P48061 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.32■■□□□ 1.32
CXCL12P48061 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.32■■□□□ 1.32
CXCL12P48061 AL138724.1-201ENST00000606771 1088 ntBASIC23.32■■□□□ 1.32
CXCL12P48061 AC011298.3-201ENST00000615796 283 ntBASIC23.32■■□□□ 1.32
CXCL12P48061 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.32■■□□□ 1.32
CXCL12P48061 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.32■■□□□ 1.32
CXCL12P48061 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms