Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DUX4L28-201ENST00000623687 678 ntBASIC17.97■□□□□ 0.47
CXCL1P09341 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL1P09341 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL1P09341 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CXCL1P09341 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL1P09341 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL1P09341 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL1P09341 MIR3665-201ENST00000578708 105 ntBASIC17.96■□□□□ 0.47
CXCL1P09341 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL1P09341 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL1P09341 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CXCL1P09341 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CXCL1P09341 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC17.95■□□□□ 0.46
CXCL1P09341 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CXCL1P09341 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CXCL1P09341 GUSBP5-202ENST00000510805 1989 ntBASIC17.95■□□□□ 0.46
CXCL1P09341 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL1P09341 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.94■□□□□ 0.46
CXCL1P09341 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC17.94■□□□□ 0.46
CXCL1P09341 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CXCL1P09341 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC17.94■□□□□ 0.46
CXCL1P09341 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CXCL1P09341 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CXCL1P09341 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.93■□□□□ 0.46
CXCL1P09341 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.93■□□□□ 0.46
CXCL1P09341 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.93■□□□□ 0.46
CXCL1P09341 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CXCL1P09341 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC17.93■□□□□ 0.46
CXCL1P09341 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CXCL1P09341 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CXCL1P09341 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.93■□□□□ 0.46
CXCL1P09341 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CXCL1P09341 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CXCL1P09341 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC17.92■□□□□ 0.46
CXCL1P09341 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CXCL1P09341 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.92■□□□□ 0.46
CXCL1P09341 CIB2-204ENST00000557846 934 ntTSL 3 BASIC17.92■□□□□ 0.46
CXCL1P09341 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CXCL1P09341 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CXCL1P09341 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CXCL1P09341 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 SLC6A10P-202ENST00000431994 2058 ntBASIC17.91■□□□□ 0.46
CXCL1P09341 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CXCL1P09341 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL1P09341 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL1P09341 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL1P09341 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 ECEL1P1-201ENST00000373592 1742 ntBASIC17.9■□□□□ 0.46
CXCL1P09341 SHD-204ENST00000599689 1729 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL1P09341 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CXCL1P09341 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL1P09341 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL1P09341 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CXCL1P09341 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL1P09341 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
CXCL1P09341 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL1P09341 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL1P09341 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL1P09341 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL1P09341 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL1P09341 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL1P09341 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.89■□□□□ 0.45
CXCL1P09341 AC073130.3-201ENST00000624389 2278 ntBASIC17.89■□□□□ 0.45
CXCL1P09341 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.89■□□□□ 0.45
CXCL1P09341 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.89■□□□□ 0.45
CXCL1P09341 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL1P09341 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL1P09341 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
CXCL1P09341 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL1P09341 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms